Package: vcfR
Title: Manipulate and Visualize VCF Data
Description: Facilitates easy manipulation of variant call format (VCF)
        data. Functions are provided to rapidly read from and write to
        VCF files. Once VCF data is read into R a parser function
        extracts matrices of data. This information can then be used
        for quality control or other purposes. Additional functions
        provide visualization of genomic data. Once processing is
        complete data may be written to a VCF file (*.vcf.gz). It also
        may be converted into other popular R objects (e.g., genlight,
        DNAbin). VcfR provides a link between VCF data and familiar R
        software.
Version: 1.16.0
Authors@R: c(
    person(c("Brian", "J."), "Knaus", role = c("cre", "aut"),
    email = "briank.lists@gmail.com", comment = c(ORCID = "0000-0003-1665-4343")),
    person(c("Niklaus", "J."), "Grunwald", role = "aut",
    email = "grunwaln@science.oregonstate.edu", comment = c(ORCID = "0000-0003-1656-7602")),
    person(c("Eric", "C."), "Anderson", role = "ctb",
    email = "eric.anderson@noaa.gov", comment = c(ORCID = "0000-0003-1326-0840")),
    person(c("David", "J."), "Winter", role = "ctb",
    email = "david.winter@gmail.com"),
    person(c("Zhian", "N."), "Kamvar", role = "ctb",
    email = "zkamvar@gmail.com", comment = c(ORCID = "0000-0003-1458-7108")),
    person(c("Javier", "F."), "Tabima", role = "ctb",
    email = "caifaz01@gmail.com", comment = c(ORCID = "0000-0002-3603-2691"))
    )
Maintainer: Brian J. Knaus <briank.lists@gmail.com>
URL: https://github.com/knausb/vcfR,
        https://knausb.github.io/vcfR_documentation/
Depends: R (>= 3.0.1)
LinkingTo: Rcpp
Imports: ape, dplyr, graphics, grDevices, magrittr, memuse, methods,
        pinfsc50, Rcpp, stats, stringr, tibble, utils, vegan,
        viridisLite
Suggests: adegenet, ggplot2, knitr, poppr, reshape2, rmarkdown, scales,
        testthat, tidyr
VignetteBuilder: knitr
License: GPL-3
RoxygenNote: 7.3.3
Encoding: UTF-8
Config/pak/sysreqs: libicu-dev
Repository: https://knausb.r-universe.dev
Date/Publication: 2026-06-08 22:13:16 UTC
RemoteUrl: https://github.com/knausb/vcfr
RemoteRef: HEAD
RemoteSha: 12fbb3399bd2cbe8d2907bd4c5260d5dc4eff4e6
NeedsCompilation: yes
Packaged: 2026-06-08 23:24:09 UTC; root
Author: Brian J. Knaus [cre, aut] (ORCID:
    <https://orcid.org/0000-0003-1665-4343>),
  Niklaus J. Grunwald [aut] (ORCID:
    <https://orcid.org/0000-0003-1656-7602>),
  Eric C. Anderson [ctb] (ORCID: <https://orcid.org/0000-0003-1326-0840>),
  David J. Winter [ctb],
  Zhian N. Kamvar [ctb] (ORCID: <https://orcid.org/0000-0003-1458-7108>),
  Javier F. Tabima [ctb] (ORCID: <https://orcid.org/0000-0002-3603-2691>)